[lsst-dm-stack-users] How to update a stack release

[Dominique Boutigny]

Hi,

I finally restarted from scratch with newinstall.sh.

But this time I get the following error while building afw from the 
master branch:
> de 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/pex_config/8.0.0.0+25130f5336/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/daf_persistence/master-gde766ea3be+db18872139/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/pex_policy/8.0.0.0+0045ad11b7/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/pex_logging/8.0.0.0+d78bf4f041/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/daf_base/master-g52403476fa+6c6aeb111f/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/utils/8.0.0.0+148fa3ac40/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/pex_exceptions/8.0.0.0+194681581d/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/base/8.0.0.0+ee2f9a34b2/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/wcslib/4.14+98989bdd6b/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/cfitsio/3310+da39a3ee5e/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/gsl/1.15+da39a3ee5e/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/minuit2/5.22.00+da39a3ee5e/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/xpa/2.1.14+da39a3ee5e/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/fftw/3.3.2+da39a3ee5e/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/eigen/3.1.1+da39a3ee5e/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/mysqlclient/5.1.65+da39a3ee5e/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/boost/1.55.0.1+1f726fe9d2/include 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/anaconda/1.8.0/include/python2.7 
> -I/sps/lsst/dev/lsstprod/DC_2014/stack_new/Linux64/anaconda/1.8.0/lib/python2.7/site-packages/numpy/core/include 
> examples/image2.cc
> :::::  c++: Internal error: Killed (program cc1plus)
> :::::  Please submit a full bug report.
> :::::  See <http://bugzilla.redhat.com/bugzilla> for instructions.
> :::::  scons: *** [python/lsst/afw/image/imageLib_wrap.os] Error 1
> :::::  scons: building terminated because of errors.

I am running on Scientific Linux version 6.

Any idea of what could be wrong ?

Dominique

Le 18/04/2014 17:06, Kian-Tat Lim a écrit :
> Dominique,
>
>> I tried to follow it but ran into problems, so I tried to restart
>> from scratch but even if I re-download everything lsst_build keeps
>> claiming that some packages are already installed.
>> Is there an option to clear everything completely and rebuild from scratch ?
> 	There are three things here: 1) getting the correct version of
> the source, 2) building from source to installable packages, and 3)
> installing the packages in your eups stack.  lsst-build is supposed to
> minimize the amount of cloning for #1 and minimize the building for #2.
>
> 	If packages are already installed, those should be OK to use.
> If you have changed the source (either manually or via "lsst-build
> prepare --ref="), the version number of the package installed in the
> eups stack should be different.
>
> 	If you think you have package versions installed that you don't
> want, you can use "eups remove" to get rid of them, but you have to have
> removed all packages dependent on them first.  Generally this shouldn't
> be necessary.
>
> 	You can clear out the entire build directory used for #1 and #2
> above by just removing it.  There is no other state.  You can also just
> start a new build directory.
>
> 	Clearing out your entire eups stack can also be done by just
> removing its directory and restarting from newinstall.sh (in a fresh
> shell).  You can also aim newinstall.sh (again in a fresh shell) at a
> new stack directory.
>
> 	Perhaps a log of the errors you are seeing would help?
>

-- 
Dominique Boutigny  -  CNRS / CC-IN2P3
Now at SLAC National Accelerator Laboratory

Kavli Building - 221
Mail     : boutigny at in2p3.fr -  boutigny at slac.stanford.edu
Office   : +1 650-926-5759   -  Cellular : +1 774-232-0912


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