[lsst-dm-stack-users] Trying out the Anaconda python with a RHEL6 installation

[Heather Kelly]

On 1/31/2014 2:21 PM, Heather Kelly wrote:
> On 1/30/2014 2:52 PM, Mario Juric wrote:
>> On 1/30/14, 9:06 , Heather Kelly wrote:
>>> Hi,
>>>
>>> So I was following that post that mentioned this possibility of using
>>> the Anaconda distribution of python in conjunction with the DMstack.
>>>
>>> I'm doing another installation at BNL :)  and they want ipython as well.
>>>  This would be a RHEL6-64 install.  And for now, we're sticking with
>>> DMstack Winter2013.  However, I saw this bit about incompatibility
>>> between the Anaconda python compilation and the DM version on the Mac -
>>> I'm assuming that is strictly a Mac issue?  Just trying to determine the
>>> path of least resistance to achieve a fresh DM install and provide a
>>> customized python including additional modules that may not come along
>>> for the ride with a binary installation.
>>>
>> I can't guarantee that W'13 will build (try it!), but I have built S'13
>> with RHEL6+Anaconda 1.8.0.
>>
>> For RHEL6, you'll want ensure Anaconda Python is in your path, then
>> follow the build-from-source instructions until just *before*:
>>
>> 	eups distrib install --nolocks -t Summer2013 lsst_distrib
>>
>> and *before* you run that command, do:
>>
>> 	cd $LSST_HOME
>> 	cat >> site/manifest.remap
>> 	        python  system
>> 	        numpy   system
>> 	        scipy   system
>> 	        matplotlib system
>>
>> That should make the stack use the system python, instead trying to
>> build its own.
>>
>> Let us know if it worked.
>>
>> PS: I just typed this above, so watch out for typos!
>>
>> Cheers,
> Hi Mario,
>
> That was a great help - though I seem to have hit a snag at BNL on SL6. 
> Linux ccs.inst.bnl.gov 2.6.32-358.14.1.el6.x86_64 #1 SMP Tue Jul 16
> 14:24:33 CDT 2013 x86_64 x86_64 x86_64 GNU/Linux
>
> This is with Winter2013-v6_2.  I'm hoping this looks familiar..
>
> activemq-cpp-library-3.5.0-src.tar.gz
> tar zvxf activemq-cpp-library-3.5.0-src.tar.gz
> tar: write error
> Running automake.sh...
> ./configure
> --prefix=/opt/lsst/DMstack/Winter2013-v6_2/Linux64/external/activemqcpp/3.5.0+4
> --with-apr=/opt/lsst/DMstack/Winter2013-v6_2/Linux64/external/apr/1.3.3+1 --with-apr-util=/opt/lsst/DMstack/Winter2013-v6_2/Linux64/external/apr/1.3.3+1
> --enable-doxygen-man
> /usr/bin/make
> make ...
> ./decaf/internal/net/ssl/openssl/OpenSSLParameters.h:49: error: ISO C++
> forbids declaration of âSSL_CTXâ with no type
> ./decaf/internal/net/ssl/openssl/OpenSSLParameters.h:49: error: expected
> â;â before â*â token
> ./decaf/internal/net/ssl/openssl/OpenSSLParameters.h:50: error: ISO C++
> forbids declaration of âSSLâ with no type
> ./decaf/internal/net/ssl/openssl/OpenSSLParameters.h:50: error: expected
> â;â before â*â token
> ./decaf/internal/net/ssl/openssl/OpenSSLParameters.h:64: error: expected
> â)â before â*â token
> ./decaf/internal/net/ssl/openssl/OpenSSLParameters.h:109: error: ISO C++
> forbids  declaration of âSSL_CTXâ with no type
> ./decaf/internal/net/ssl/openssl/OpenSSLParameters.h:109: error:
> expected â;â before â*â token
> ./decaf/internal/net/ssl/openssl/OpenSSLParameters.h:113: error:
> expected â;â before âSSLâ
> ./decaf/internal/net/ssl/openssl/OpenSSLParameters.h:113: error: ISO C++
> forbids declaration of âSSLâ with no type
> ./decaf/internal/net/ssl/openssl/OpenSSLParameters.h:113: error:
> expected â;â before â*â token
> ./decaf/internal/net/ssl/openssl/OpenSSLParameters.h:123: error:
> expected â;â before âOpenSSLParametersâ
> make[2]: ***
> [decaf/internal/net/ssl/openssl/libactivemq_cpp_la-OpenSSLServerSocket.lo]
> Error 1
> libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -ansi -pedantic
> -DLINUX=2 -D_REENTRANT -D_GNU_SOURCE
> -I/opt/lsst/DMstack/Winter2013-v6_2/Linux64/external/apr               
> /1.3.3+1/include/apr-1
> -I/opt/lsst/DMstack/Winter2013-v6_2/Linux64/external/apr/1.3.3+1/include/apr-1
> -W -Wall -Wextra -Wconversion -fPIC -fstrict-aliasing
> -Wst                rict-aliasing=2 -Wno-long-long -g -O2 -pthread -MT
> decaf/internal/net/libactivemq_cpp_la-URIHelper.lo -MD -MP -MF
> decaf/internal/net/.deps/libactivemq_cpp_la-UR               
> IHelper.Tpo -c decaf/internal/net/URIHelper.cpp -o
> decaf/internal/net/libactivemq_cpp_la-URIHelper.o >/dev/null 2>&1
> libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -ansi -pedantic
> -DLINUX=2 -D_REENTRANT -D_GNU_SOURCE
> -I/opt/lsst/DMstack/Winter2013-v6_2/Linux64/external/apr               
> /1.3.3+1/include/apr-1
> -I/opt/lsst/DMstack/Winter2013-v6_2/Linux64/external/apr/1.3.3+1/include/apr-1
> -W -Wall -Wextra -Wconversion -fPIC -fstrict-aliasing
> -Wst                rict-aliasing=2 -Wno-long-long -g -O2 -pthread -MT
> decaf/internal/net/libactivemq_cpp_la-Network.lo -MD -MP -MF
> decaf/internal/net/.deps/libactivemq_cpp_la-Netw                ork.Tpo
> -c decaf/internal/net/Network.cpp -o
> decaf/internal/net/libactivemq_cpp_la-Network.o >/dev/null 2>&1
> mv -f decaf/internal/net/.deps/libactivemq_cpp_la-URIHelper.Tpo
> decaf/internal/net/.deps/libactivemq_cpp_la-URIHelper.Plo
> mv -f decaf/internal/net/.deps/libactivemq_cpp_la-Network.Tpo
> decaf/internal/net/.deps/libactivemq_cpp_la-Network.Plo
> make[2]: Leaving directory
> `/opt/lsst/DMstack/Winter2013-v6_2/EupsBuildDir/Linux64/activemqcpp-3.5.0+4/activemq-cpp-library-3.5.0/src/main'
> make[1]: *** [all-recursive] Error 1
>
> Any ideas or workarounds?
> Take care,
> Heather
>
>
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ah it looks like we needed to install openssl-devel  :)