[LSST|dm-users 663] Re: eups distrib: Failed to build fftw-3.3.3.eupspkg with error: member reference base type 'ticks' (aka 'int') is not a structure or union

[Phil Marshall]

Thanks all.

I unsetenv-ed all compilers, and also unsetenv-ed my LD_LIBRARY_PATH and
tried again. The build.log is much the same (and is attached).
Along with Mario's flagging of read_real_time being found, I see this error:

In file included from timer.c:29:
./cycle.h:112:9: error: unknown type name 'timebasestruct_t'
typedef timebasestruct_t ticks;

So I guess I have installed a library somewhere for some other reason (with
homebrew, probably - I don't use macports) and now the LSST installer is
trying to use that one instead of its own. But, I don't know what that
library is, and presumably the other software I installed that needs it
will stop working if I were to remove it. So, isn't the right thing to do
to somehow force the LSST installer to ignore read_real_time if it exists
on my system, and carry on as if the test had returned

   checking for read_real_time... no

like Mario's did? I don't know how to make that change in the installation
script.


Alternatively, going back to Russell's note: I use homebrew, which is very
useful. How do I "disable" this while I install the DM stack? Any disabling
would need to be temporary, of course.

Thanks for your help!

Phil

On Fri, May 15, 2015 at 9:47 PM, Mario Juric <mjuric at astro.washington.edu>
wrote:

> On 5/15/15 12:33 , Phil Marshall wrote:
> >
> > This *looks* like a genuine bug,  or maybe an undocumented need for some
> > compiler flags. I couldn't find any mention of this error in this email
> > list archive.
> >
> > I am following Simon's instructions
> > at https://confluence.lsstcorp.org/display/SIM/Catalogs+and+MAF (like so
> > many of us MAF hopefuls) and running Mac OS X Yosemite.
> >
> > The build.log is attached. All suggestions welcome!
> >
>
> Hi Phil,
>         I also suspect something is interfering with the normal build. Do
> you
> have other compilers on your path? Special libraries? Do you have CC
> and/or CXX defined?
>
> Here's some further evidence pointing to that:
>
> My Yosemite fftw build.log file:
> ========
> ....
> checking for read_real_time... no
> checking for time_base_to_time... no
> ....
> ========
>
> and the build.log that you attached:
> ========
> ....
> checking for read_real_time... yes
> checking for time_base_to_time... yes
> ....
> ========
>
> Based on some cursory reading on teh internets, read_real_time seems to
> be an AIX thing (!?).
>
> -- Mario
>
> > Cheers
> >
> > Phil
> >
> >
> > pjm% eups distrib install sims_maf -t sims
> >   [  1/59 ]  cfitsio 3360.lsst1
> > done.
> >   [  2/59 ]  doxygen 1.8.5 (already installed)
> >  done.
> >   [  3/59 ]  eigen 3.2.0
> >  done.
> >   [  4/59 ]  fftw 3.3.3 ...
> >
> > ***** error: from
> > /Users/pjm/lsst/EupsBuildDir/DarwinX86/fftw-3.3.3/build.log:
> >      return (((double)t1.tb_high - (double)t0.tb_high) * 1.0e9 +
> >                       ~~^~~~~~~~
> > ./cycle.h:125:46: error: member reference base type 'ticks' (aka 'int')
> > is not a structure or union
> >      return (((double)t1.tb_high - (double)t0.tb_high) * 1.0e9 +
> >                                            ~~^~~~~~~~
> > ./cycle.h:126:18: error: member reference base type 'ticks' (aka 'int')
> > is not a structure or union
> >              ((double)t1.tb_low - (double)t0.tb_low));
> >                       ~~^~~~~~~
> > ./cycle.h:126:38: error: member reference base type 'ticks' (aka 'int')
> > is not a structure or union
> >              ((double)t1.tb_low - (double)t0.tb_low));
> >                                           ~~^~~~~~~
> > 2 warnings and 8 errors generated.
> > make[2]: *** [timer.lo] Error 1
> > make[2]: *** Waiting for unfinished jobs....
> > mv -f .deps/tensor8.Tpo .deps/tensor8.Plo
> > mv -f .deps/tensor9.Tpo .deps/tensor9.Plo
> > mv -f .deps/tile2d.Tpo .deps/tile2d.Plo
> > make[1]: *** [all-recursive] Error 1
> > make: *** [all] Error 2
> > + exit -4
> > eups distrib: Failed to build fftw-3.3.3.eupspkg: Command:
> > source /Users/pjm/lsst/eups/bin/setups.sh; export
> > EUPS_PATH=/Users/pjm/lsst;
> > (/Users/pjm/lsst/EupsBuildDir/DarwinX86/fftw-3.3.3/build.sh) >>
> > /Users/pjm/lsst/EupsBuildDir/DarwinX86/fftw-3.3.3/build.log 2>&1
> > 4>/Users/pjm/lsst/EupsBuildDir/DarwinX86/fftw-3.3.3/build.msg
> > exited with code 252
> >
> >
> > _______________________________________________
> > dm-users mailing list
> > dm-users at lists.lsst.org
> > https://lists.lsst.org/mailman/listinfo/dm-users
> >
>
>
> --
> Mario Juric,
> UW Astronomy Faculty | UW eScience | LSST DM Project Scientist
> Web : http://research.majuric.org      Phone : +1 609 933 1033
> _______________________________________________
> dm-users mailing list
> dm-users at lists.lsst.org
> https://lists.lsst.org/mailman/listinfo/dm-users
>
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